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Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
Alternative TitleSequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
Wang Fang1; Gao Zhengliang2; An Mengnan1; Zhou Benguo2; Wu Yuanhua1
2013
Source PublicationJOURNAL OF INTEGRATIVE AGRICULTURE
ISSN2095-3119
Volume12Issue:7Pages:1195-1200
AbstractComplete genome sequence of Potato virus Y Liaoning isolate (PVY-LN) causing tobacco vein necrosis symptoms were isolated from Liaoning Province in China. Genome sequences of PVY-LN was 9 714 nucleotides in length, excluding the 3'-terminal poly (A) tail. PVY-LN encodes a single long open reading frame (ORF) of polyprotein that is predicted to be cleaved into ten mature proteins by three viral proteases. No recombination can be predicted in PVY-LN sequences compared with that of the other PVY strains using Recombination Detection Programe v. 4.16 (RDP4). Complete genome sequence comparison and phylogenetic analysis indicated that PVY-LN is closely related to PVY necrosis strain (PVYN).
Other AbstractComplete genome sequence of Potato virus Y Liaoning isolate (PVY-LN) causing tobacco vein necrosis symptoms were isolated from Liaoning Province in China. Genome sequences of PVY-LN was 9 714 nucleotides in length, excluding the 3'- terminal poly (A) tail. PVY-LN encodes a single long open reading frame (ORF) of polyprotein that is predicted to be cleaved into ten mature proteins by three viral proteases. No recombination can be predicted in PVY-LN sequences compared with that of the other PVY strains using Recombination Detection Programe v. 4.16 (RDP4). Complete genome sequence comparison and phylogenetic analysis indicated that PVY-LN is closely related to PVY necrosis strain (PVY~N).
KeywordNECROSIS PVYN RECOMBINATION CROPS PVY Liaoning isolate cloning genome sequencing phylogeny
Indexed ByCSCD
Language英语
Funding Project[Programs for Science and Technology of State Tobacco Monopoly Administration, China] ; [Science and Technology of Liaoning Province Tobacco Monopoly Administration, China] ; [Key Programe of Anhui Province Tobacco Monopoly Administration, China]
CSCD IDCSCD:4887735
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Document Type期刊论文
Identifierhttp://ir.imr.ac.cn/handle/321006/147334
Collection中国科学院金属研究所
Affiliation1.中国科学院金属研究所
2.Anhui Acad Agr Sci, Tobacco Res Institute, Hefei 230031, Peoples R China
Recommended Citation
GB/T 7714
Wang Fang,Gao Zhengliang,An Mengnan,et al. Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China[J]. JOURNAL OF INTEGRATIVE AGRICULTURE,2013,12(7):1195-1200.
APA Wang Fang,Gao Zhengliang,An Mengnan,Zhou Benguo,&Wu Yuanhua.(2013).Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China.JOURNAL OF INTEGRATIVE AGRICULTURE,12(7),1195-1200.
MLA Wang Fang,et al."Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China".JOURNAL OF INTEGRATIVE AGRICULTURE 12.7(2013):1195-1200.
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